Publication | Open Access
Simultaneous estimation of free energies and rates using forward flux sampling and mean first passage times
25
Citations
53
References
2015
Year
Free EnergyEngineeringParticle MethodMarkov Chain Monte CarloSimultaneous EstimationNumerical SimulationNucleationFree Energy ProfileModeling And SimulationEstimation TheoryStatisticsPhase SpaceFlux SamplingBiophysicsPhysicsSampling TheoryInverse ProblemsMonte Carlo SamplingSequential Monte CarloSignal ProcessingFree EnergiesNatural SciencesMonte Carlo MethodInteracting Particle SystemChemical KineticsMultiscale Modeling
In this work, a method is proposed to simultaneously compute the transition rate constant and the free energy profile of a rare event along an order parameter connecting two well-defined regions of phase space. The method employs a forward flux sampling technique in combination with a mean first passage time approach to estimate the steady state probability and mean first passage times. These quantities are fitted to a Markovian model that allows the estimation of the free energy along the chosen order parameter. The proposed technique is first validated with two test systems (an Ising model and a model potential energy surface) and then used to study the solid-phase homogeneous nucleation of selected polyhedral particles.
| Year | Citations | |
|---|---|---|
Page 1
Page 1