Genome Announcements · 2015 · 81 citations · 7 references
Life SciencesInfectious DiseasesVeterinary MicrobiologyGenomicsMolecular VirologyVirologyAnimal Infectious DiseasesGenomic EpidemiologyInfectious DiarrheaPathogen GenomicsViral EpidemiologyViral GenomicsMolecular Epidemiology Of VirusesMolecular Outbreak InvestigationPorcine Infectious DiseasesWhole-genome Sequence Analysis
We report the first and only case of a porcine epidemic diarrhea (PED) outbreak occurring in December 2014 in northern France, and we show using the full-length genome sequence of the French PED virus (PEDV) isolate that it was a PEDV indel strain close to German PEDV strains recently isolated.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Gregory W. Stevenson, Hai Hoang, Kent Schwartz et al. · Journal of Veterinary Diagnostic Investigation · 2013 · 711 citations · Full text
Veterinary Medicine, Infectious Diseases, Veterinary Microbiology +17