Molecular & Cellular Proteomics · 2015 · 66 citations · 33 references
Life SciencesBiochemistryCell BiologyCellular BiochemistryGlycobiologyMucosal ImmunologyCell-surface GlycansEpithelial DifferentiationGlycan AnalysisGlycan BiosynthesisGlycan StructureIntestinal Barrier FunctionCell Surface GlycoconjugatesCell Surface GlycoproteinsGlycan Remodeling During DevelopmentGlycan SequencingGlycosylation AnalysisHigh-mannose GlycansHigh-mannose N-glycansIntestinal Epithelial Differentiation
Changes in cell surface glycosylation occur during the development and differentiation of cells and have been widely correlated with the progression of several diseases. Because of their structural diversity and sensitivity to intra- and extracellular conditions, glycans are an indispensable tool for analyzing cellular transformations. Glycans present on the surface of intestinal epithelial cells (IEC) mediate interactions with billions of native microorganisms, which continuously populate the mammalian gut. A distinct feature of IECs is that they differentiate as they migrate upwards from the crypt base to the villus tip. In this study, nano-LC/ESI QTOF MS profiling was used to characterize the changes in glycosylation that correspond to Caco-2 cell differentiation. As Caco-2 cells differentiate to form a brush border membrane, a decrease in high mannose type glycans and a concurrent increase in fucosylated and sialylated complex/hybrid type glycans were observed. At day 21, when cells appear to be completely differentiated, remodeling of the cell surface glycome ceases. Differential expression of glycans during IEC maturation appears to play a key functional role in regulating the membrane-associated hydrolases and contributes to the mucosal surface innate defense mechanisms. Developing methodologies to rapidly identify changes in IEC surface glycans may lead to a rapid screening approach for a variety of disease states affecting the GI tract. Changes in cell surface glycosylation occur during the development and differentiation of cells and have been widely correlated with the progression of several diseases. Because of their structural diversity and sensitivity to intra- and extracellular conditions, glycans are an indispensable tool for analyzing cellular transformations. Glycans present on the surface of intestinal epithelial cells (IEC) mediate interactions with billions of native microorganisms, which continuously populate the mammalian gut. A distinct feature of IECs is that they differentiate as they migrate upwards from the crypt base to the villus tip. In this study, nano-LC/ESI QTOF MS profiling was used to characterize the changes in glycosylation that correspond to Caco-2 cell differentiation. As Caco-2 cells differentiate to form a brush border membrane, a decrease in high mannose type glycans and a concurrent increase in fucosylated and sialylated complex/hybrid type glycans were observed. At day 21, when cells appear to be completely differentiated, remodeling of the cell surface glycome ceases. Differential expression of glycans during IEC maturation appears to play a key functional role in regulating the membrane-associated hydrolases and contributes to the mucosal surface innate defense mechanisms. Developing methodologies to rapidly identify changes in IEC surface glycans may lead to a rapid screening approach for a variety of disease states affecting the GI tract. Proliferative stem cells located in the base of intestinal crypts form specialized differentiated cell types as they migrate up the villi. A continuous cell turnover occurs every four to eight days as newly differentiated cells eventually replace older cells at the tip of the villus. Self-renewing intestinal epithelial cells (IECs)1 are highly susceptible to malignant growths, which arise from imbalances in cellular proliferation, differentiation, and apoptosis. If the number of developing cells outbalances the number of mature cells undergoing apoptosis, an abnormal growth of tissue can form which, in some cases, may lead to malignant tumors. Thus, a greater understanding of the molecular details of IEC differentiation may lead to novel insight into the pathophysiology of a variety of GI diseases, including cancer. IECs are known to have highly glycosylated surfaces (1.Moran A.P. Gupta A. Joshi L. Sweet-talk: role of host glycosylation in bacterial pathogenesis of the gastrointestinal tract.Gut. 2011; 60: 1412-1425Crossref PubMed Scopus (164) Google Scholar, 2.Marcobal A. Southwick A.M. Earle K.A. Sonnenburg J.L. A refined palate: bacterial consumption of host glycans in the gut.Glycobiology. 2013; 23: 1038-1046Crossref PubMed Scopus (125) Google Scholar, 3.Karlsson K.A. Bacterium-host protein-carbohydrate interactions and pathogenicity.Biochem. Soc. Trans. 1999; 27: 471-474Crossref PubMed Scopus (69) Google Scholar). The distribution of these displayed glycans across the cell surface is sensitive to the internal state as well as the external environment of the cell (4.van Kooyk Y. Rabinovich G.A. Protein-glycan interactions in the control of innate and adaptive immune responses.Nat. Immunol. 2008; 9: 593-601Crossref PubMed Scopus (565) Google Scholar, 5.Ohtsubo K. Marth J.D. 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Comparative N-glycan profiling of colorectal cancer cell lines reveals unique bisecting GlcNAc and alpha-2,3-linked sialic acid determinants are associated with membrane proteins of the more metastatic/aggressive cell lines.J. Proteome Res. 2014; 13: 277-288Crossref PubMed Scopus (85) Google Scholar, 17.Balog C.I. Stavenhagen K. Fung W.L. Koeleman C.A. McDonnell L.A. Verhoeven A. Mesker W.E. Tollenaar R.A. Deelder A.M. Wuhrer M. N-glycosylation of colorectal cancer tissues: a liquid chromatography and mass spectrometry-based investigation.Mol. Cell. Proteomics. 2012; 11: 571-585Abstract Full Text Full Text PDF PubMed Scopus (124) Google Scholar). Although the mechanisms that control these specific changes are not well understood, it is evident that glycosylation is critical for these cellular transformations. Determining the surface glycosylation changes of IECs in relation to their differentiation may lead to a better understanding of this malignancy. Among the various intestinal epithelial cell types, absorptive enterocytes are the most abundant (18.Crosnier C. Stamataki D. Lewis J. Organizing cell renewal in the intestine: stem cells, signals and combinatorial control.Nat. Rev. Genet. 2006; 7: 349-359Crossref PubMed Scopus (568) Google Scholar). Differentiation of enterocytes results in the formation of a brush border on their apical surface, a structure that controls membrane-associated hydrolases and nutrient transport. The human cell line Caco-2 has been widely accepted and used as an in vitro model for absorptive intestinal epithelial cells since its establishment in 1974 (19.Fogh J. Wright W.C. Loveless J.D. Absence of HeLa cell contamination in 169 cell lines derived from human tumors.J. Natl. Cancer Inst. 1977; 58: 209-214Crossref PubMed Scopus (570) Google Scholar, 20.Rousset M. 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In after cell were in and were on a and were by at for to the and cells by a of at for to were with of in and for at to the the of was to the which were at in a for at of of were for at to proteins and for at The was and were by were with of and a of and acid in were the and with at a of to and were with a of and acid in and were in and an nano-LC/ESI QTOF MS are to the MS with a which of and with and a tip. The a to and glycans at a of and acid in and in acid in MS were at a mass of in were with and was with a of on the of the on the where the and were at and were with an to mass S. The development of to and the human 9: PubMed Scopus Google Scholar). was on of the mammalian N-glycan and MS of were rapid and of S. S. S. R. native profiling with and for the of cancer 2011; PubMed Scopus (125) Google Scholar, S. S. S. profiling highly sensitive and specific N-glycan biomarkers for epithelial A. 2013; PubMed Scopus Google Scholar, S. 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K. profiling of 2012; PubMed Scopus Google rapid on of were the as the of glycans were into which high mannose complex/hybrid fucosylated and sialylated distribution on the Caco-2 cell surface changes as cells The most abundant glycans on cell surfaces were high mannose type to of the In differentiated cells were by fucosylated and sialylated and of the number of glycans on the cell with the in the of complex/hybrid type the of high mannose type glycans on differentiated cells to The from high mannose to complex/hybrid cell surfaces is as a function of in the of in the was most cells confluence and in the of proliferation cells levels of high mannose and complex/hybrid type glycans to a of differentiation at day 21, the distribution of glycans at day the of differentiation, complex/hybrid type glycans that and sialic acid to of the cell surface In to global were at the as an for key compared the glycans in cells and in differentiated cells which are of the states and after differentiation, For were and are not were by mass and by MS were in cells and in differentiated these the changes in the of were after differentiation as by a changes are in from day to day where of high abundant and abundant of glycans that in after differentiation are in the that are in the for glycans including and are in Among the glycans to be and differentiated cells, structural were structural were by The of and were used to identify the of a bisecting of sialylated at and of For example, the of sialylated where are at with at and Although a in after differentiation. to the a a and an as by and Comparative changes of specific on and differentiated cell surfaces are in mannose type the most abundant glycans in In particular, an of and was observed differentiation. 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E. of cell quantitative of the membrane of Caco-2 7: PubMed Scopus Google Scholar). including and proteins were with high Protein are in of a of proteins were and differentiated cells, as by the in and differentiated cells of the on their cell surfaces on the state of differentiation, several membrane were on unique proteins were to their molecular the of membrane that are unique to differentiated cells are to on cell and In to cells, differentiated cells have a higher of cell membrane cell and immune In acid extracellular and proteins were more abundant in in differentiated from differentiated and differentiated Caco-2 cells were to human glycosylation profiling to the expression of that in A of a was to Comparative expression demonstrated that of were more in differentiated cells compared with cells, as in N-glycan high mannose glycans are by to and type increase in the expression of in differentiated cells is with the observed in high mannose type glycans and concurrent in type glycans observed in the Among the in differentiated Caco-2 cells, the for a that bisecting GlcNAc glycans and the for a glycans of bisecting GlcNAc and were observed in levels in differentiated The expression of a of by more in differentiated cells when compared with expression levels in cells differentiated and differentiated cells by that more The was in differentiated In differentiated cells, two in were As cells to differentiate expression of associated with the which with the Differentiation of Caco-2 cells the days and with the of and levels of intestinal structural revealed that after day the cell surface to type As the changes in the cell surface during IEC differentiation is of that the changes are hydrolases as which are present on the apical are highly glycosylated S. of hydrolases of kidney and Rev. PubMed Scopus Google Scholar, and of brush border membrane and of enterocytes and Rev. 1986; PubMed Google and their function and have been to be associated with the glycans M. A. of glycosylation and on the function of intestinal PubMed Scopus Google Scholar, M. I. A. Zweibaum A. The of in HT-29 cells is a function of their state of 1987; PubMed Scopus (69) Google Scholar). glycosylation in rapid of these brush border As in the the of the cell surface to increase the surface is on day The of type on cell surfaces with the development and of and differentiated states was in the of high mannose type present on the cell levels of this have been reported in the membrane proteins of and differentiated colorectal cancer cells (16.Sethi M.K. Thaysen-Andersen M. Smith J.T. Baker M.S. Packer N.H. Hancock W.S. Fanayan S. Comparative N-glycan profiling of colorectal cancer cell lines reveals unique bisecting GlcNAc and alpha-2,3-linked sialic acid determinants are associated with membrane proteins of the more metastatic/aggressive cell lines.J. Proteome Res. 2014; 13: 277-288Crossref PubMed Scopus (85) Google and in the cell of Caco-2 cells N. J. K. T. Y. J. T. T. T. M. Y. Y. cellular cells and the for cellular Natl. 2013; PubMed Scopus Google Scholar). an of and on the cell surface of is to be of the of proteins of high mannose type In the N-glycan are for the of GlcNAc to form and type in the of this in of these In as Caco-2 cells a of the of on the cell surface was observed. in high mannose type glycans were by in type Glycosylation and differentiation appear highly correlated with sialylation the key is to sialic acid as it on the of in sialylation of differentiated cell membrane glycans can be by the expression of the which for a sialyltransferase that sialic acid to a in an The for the cell to the of acids on differentiated cells a sialic acid and differentiation. The of sialic acid on has functional on the cell with the external environment R. Sialic acids as of molecular and cellular PubMed Scopus Google Scholar, A. Sialic acids in human health and 2008; Full Text Full Text PDF PubMed Scopus Google Scholar). In differentiated cells are on the of the and are to is for the host to the types of glycans on differentiated cells as sialic acid with high A. Southwick A.M. Earle K.A. Sonnenburg J.L. A refined palate: bacterial consumption of host glycans in the gut.Glycobiology. 2013; 23: 1038-1046Crossref PubMed Scopus (125) Google Scholar). feature of the mature glycosylation is levels of the bisecting GlcNAc were also observed in the from differentiated cells, which for for the of a bisecting The bisecting GlcNAc of and has on membrane For example, the of a bisecting GlcNAc has for proteins in as which is known to be a of of in Rev. PubMed Scopus Google Scholar, M. Y. K. N. and bisecting the of the N-glycan their and Res. PubMed Scopus Google Scholar). Thus, that the of bisecting GlcNAc on differentiated cells is in the of The of expression changes are as the are in during the of which and studies be to changes to the Although not structural were changes are on the expression as and structural analyses of the surface glycans are and be a of At the of proteins on the cell surface as Caco-2 cells changes in proteins a variety of molecular changes of these proteins may as for understanding the of differentiation and has in understanding the that lead to malignant transformations. The to characterize and mass profiling is a tool for understanding results that IEC cell differentiation is by characteristic changes in the cell surface which may be specific and sensitive of differentiation Changes in on the cell membrane may be a of differentiation. Caco-2 cells are an model cell line that a characteristic on their is to that be when Caco-2 cells as changes in glycosylation expression patterns are and for their with and for with cell
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TANDEM: matching proteins with tandem mass spectra
Robertson Craig, Ronald C. Beavis · Bioinformatics · 2004 · 2.6K citations · Full text