iMAT: an integrative metabolic analysis tool

Integration of biological networks and gene expression data using Cytoscape

Melissa Cline, Michael Smoot, Ethan Cerami et al. · Nature Protocols · 2007 · 2.6K citations · Full text

Systems Biology, Functional Genomics, Biological Networks +13

Global reconstruction of the human metabolic network based on genomic and bibliomic data

Natalie C. Duarte, Scott A. Becker, Neema Jamshidi et al. · Proceedings of the National Academy of Sciences · 2007 · 1.4K citations · Full text

High-throughput generation, optimization and analysis of genome-scale metabolic models

Christopher S. Henry, Matthew DeJongh, Aaron A. Best et al. · Nature Biotechnology · 2010 · 1.1K citations

Metabolic Network, Engineering, Computational Biology +7

Network-based prediction of human tissue-specific metabolism

Tomer Shlomi, Moran N. Cabili, Markus J. Herrgård et al. · Nature Biotechnology · 2008 · 656 citations

Metabolic Network, Systems Biology, Engineering +8

Context-Specific Metabolic Networks Are Consistent with Experiments

Scott A. Becker, Bernhard Ø. Palsson · PLoS Computational Biology · 2008 · 613 citations · Full text

Engineering, Genetics, Comprehensive Genome-scale Reconstructions +20