Carcinogenesis · 2006 · 34 citations · 55 references
Life SciencesGeneticsOncologyCancer GeneticsInnate ImmunityMolecular OncologyBreast Cancer Risk AssessmentCancer GenomicsDisease Susceptibility LociGenetic Risk AssessmentGenome-wide Association StudiesInnate Immune Gene PolymorphismsCancer Risk AssociationCommon Genetic VariantsGenetic Risk VariantsHaplotype Frequency AnalysisInnate Immunity Gene VariantsMannose-binding Lectin PolymorphismsMannose-binding LectinsRacial Risk Disparities
Common genetic variants in cancer-related genes contribute to breast cancer. The innate immune system plays a crucial role in the immune surveillance against malignancies, thus it is plausible that genetic variations in key genes of the innate immunity such as the mannose-binding lectin (MBL), MBL2, could influence the risk for breast cancer. We investigated the association of MBL2 genotypes with breast cancer and conducted a comprehensive genotype and haplotype analysis of 26 MBL2 single nucleotide polymorphisms (SNPs) in a case-control study of breast cancer [166 African-American (AA) case patients versus 180 controls and 127 Caucasian (CAU) case patients versus 137 controls]. We observed that the A allele of the 3'-UTR SNP Ex4-1067 (NCBI SNP ID: rs10824792) was significantly associated with a decreased disease risk in AA women [odds ratio (OR) = 0.47, 95% confidence interval (CI) = 0.27-0.81]. Haplotype analysis of MBL2 showed that the frequency of the corresponding 3' haplotype TATAAC (Ex4-1483, Ex4-1067, Ex4-1047, Ex4-901, Ex4-710, 3238bp 3' STP) was lower in cases than controls among AA women (0.15 versus 0.21; P = 0.02) suggesting a protective effect after adjusting for covariates (OR = 0.51, 95% CI = 0.29-0.88, P = 0.018). In conclusion, this study presents preliminary evidence that common genetic variants in the 3'-UTR of MBL2 might influence the risk for breast cancer in AA women, probably in interaction with the 5' secretor haplotypes that are associated with high concentrations of MBL.
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Haploview: analysis and visualization of LD and haplotype maps
Jeffrey C. Barrett, Ben Fry, Julian Maller et al. · Bioinformatics · 2004 · 14.7K citations · Full text
The Structure of Haplotype Blocks in the Human Genome
Stacey Gabriel, S. F. Schaffner, Huy Nguyen et al. · Science · 2002 · 5.9K citations