BioTechniques · 2009 · 38 citations · 10 references
Life SciencesMolecular BiologyMolecular GeneticsGene ExpressionGenomicsSequence AnalysisDna SequencingNext-generation SequencingTranscription Start SitesAmplificationTranscription Start Site MappingTranscription Start Site PredictionTranscriptional Start Sites
We present a high-throughput method for investigating the transcriptional starting sites of genes of interest, which we named Deep-RACE (Deep-rapid amplification of cDNA ends). Taking advantage of the latest sequencing technology, it allows the parallel analysis of multiple genes and is free of time-consuming cloning steps. In comparison to the sequencing of RACE PCR products, our approach is more precise and more cost-effective even for batches as small as 17.
10
Mapping and quantifying mammalian transcriptomes by RNA-Seq
A Mortazavi, Brian A. Williams, Kenneth McCue et al. · Nature Methods · 2008 · 14.3K citations
<tt>BLAT</tt>—The <tt>BLAST</tt>-Like Alignment Tool
W. James Kent · Genome Research · 2002 · 8.4K citations · Full text
Ewan Birney, Shane Neph, Evelyn J. Cheung et al. · Nature · 2007 · 5.3K citations · Full text
Galaxy: A platform for interactive large-scale genome analysis
Belinda Giardine, Cathy Riemer, Ross C. Hardison et al. · Genome Research · 2005 · 2.1K citations · Full text
Genome-wide analysis of mammalian promoter architecture and evolution
Piero Carninci, Albin Sandelin, Boris Lenhard et al. · Nature Genetics · 2006 · 1.4K citations