Nature Communications · 2012 · 1.4K citations · 43 references
Life SciencesCardiologyMicrobiologyInflammationMetagenomicsMicrobiome ResearchFunctional MetagenomicsGut MicrobiomeGut MicrobiotaHost-associated MetagenomicsMetabolic InflammationMetagenomic AnalysisAltered Peptidoglycan SynthesisArterial Wall ThickeningAtherosclerosis RiskAtherosclerotic Lipid AccumulationGut Microbiota DysbiosisHuman Gut MetagenomicsLipid AccumulationPeptidoglycan Biosynthesis
Recent findings have implicated the gut microbiota as a contributor of metabolic diseases through the modulation of host metabolism and inflammation. Atherosclerosis is associated with lipid accumulation and inflammation in the arterial wall, and bacteria have been suggested as a causative agent of this disease. Here we use shotgun sequencing of the gut metagenome to demonstrate that the genus Collinsella was enriched in patients with symptomatic atherosclerosis, defined as stenotic atherosclerotic plaques in the carotid artery leading to cerebrovascular events, whereas Roseburia and Eubacterium were enriched in healthy controls. Further characterization of the functional capacity of the metagenomes revealed that patient gut metagenomes were enriched in genes encoding peptidoglycan synthesis and depleted in phytoene dehydrogenase; patients also had reduced serum levels of β-carotene. Our findings suggest that the gut metagenome is associated with the inflammatory status of the host and patients with symptomatic atherosclerosis harbor characteristic changes in the gut metagenome. The gut microbiota has emerged as an environmental factor that can influence the development of obesity and diabetes. Here, Karlsson et al. report compositional and functional alterations of the gut metagenome in patients with symptomatic atherosclerosis.
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
R. C. Edgar · Nucleic Acids Research · 2004 · 46.5K citations · Full text
Search and clustering orders of magnitude faster than BLAST
R. C. Edgar · Bioinformatics · 2010 · 21.7K citations · Full text
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower, J. Fah Sathirapongsasuti, Nicola Segata et al. · Nature · 2012 · 11.9K citations · Full text
Life Sciences, Biology, Microbiology +17