The Journal of Physical Chemistry A · 2007 · 112 citations · 31 references
Natural SciencesBiochemistryChemistryComputational ChemistrySpectroscopic AnalysisSpectroscopyInfrared SpectroscopyMolecular SpectroscopyMolecular SymmetryOptical SpectroscopySpectroscopy Of BiomoleculesStructural ElucidationAb Initio CalculationsAlkali Metal ChemistryInfrared Absorption SpectraInfrared SpectraIon SolvationLow-energy ConformersMetal Ion ChemistryProton Affinity
The gas-phase structures of protonated and alkali-metal-cationized lysine (Lys) and epsilon-N-methyllysine (Lys(Me)) are investigated using infrared multiple photon dissociation (IRMPD) spectroscopy utilizing light generated by a free electron laser, in conjunction with ab initio calculations. IRMPD spectra of Lys.Li(+) and Lys.Na(+) are similar, but the spectrum for Lys.K(+) is different, indicating that the structure of lysine in these complexes depends on the metal ion size. The carbonyl stretch of a carboxylic acid group is clearly observed in each of these spectra, indicating that lysine is nonzwitterionic in these complexes. A detailed comparison of these spectra to those calculated for candidate low-energy structures indicates that the bonding motif for the metal ion changes from tricoordinated for Li and Na to dicoordinated for K, clearly revealing the increased importance of hydrogen-bonding relative to metal ion solvation with increasing metal ion size. Spectra for Lys(Me).M(+) show that Lys(Me), an analogue of lysine whose side chain contains a secondary amine, is nonzwitterionic with Li and zwitterionic with K and both forms are present for Na. The proton affinity of Lys(Me) is 16 kJ/mol higher than that of Lys; the higher proton affinity of a secondary amine can result in its preferential protonation and stabilization of the zwitterionic form.
31
The Free-Electron-Laser user facility FELIX
D. Oepts, A. F. G. van der Meer, P.W. van Amersfoort · Infrared Physics & Technology · 1995 · 826 citations
Natural Sciences, Physics, Optics +10
Jose J. Valle, John R. Eyler, Jos Oomens et al. · Review of Scientific Instruments · 2005 · 307 citations · Full text
Natural Sciences, Chemistry, Physics +15