eLife · 2014 · 143 citations · 52 references
Natural SciencesBiochemistryBiophysicsIon Channel BiophysicsMolecular BiophysicsStructural BiologyChannel StructureIon Channel ModelingIon Channel PhysiologyIon ChannelsMacromolecular StructureMembrane DynamicsConductanceConformational States Of ChannelsHelix Tilt AngleMechanosensitive Channel StructureMechanosensitive ChannelsMechanosensitive Ion ChannelsSingle-molecule Fluorescence ImagingTransmembrane Helices
The mechanosensitive channel of large conductance, which serves as a model system for mechanosensitive channels, has previously been crystallized in the closed form, but not in the open form. Ensemble measurements and electrophysiological sieving experiments show that the open-diameter of the channel pore is >25 Å, but the exact size and whether the conformational change follows a helix-tilt or barrel-stave model are unclear. Here we report measurements of the distance changes on liposome-reconstituted MscL transmembrane α-helices, using a 'virtual sorting' single-molecule fluorescence energy transfer. We observed directly that the channel opens via the helix-tilt model and the open pore reaches 2.8 nm in diameter. In addition, based on the measurements, we developed a molecular dynamics model of the channel structure in the open state which confirms our direct observations. DOI: http://dx.doi.org/10.7554/eLife.01834.001.
52
VMD: Visual molecular dynamics
William Humphrey, Andrew Dalke, Klaus Schulten · Journal of Molecular Graphics · 1996 · 66.6K citations
Scalable molecular dynamics with NAMD
J. C. Phillips, Rosemary Braun, Wei Wang et al. · Journal of Computational Chemistry · 2005 · 17.4K citations · Full text