Importing ArrayExpress datasets into R/Bioconductor - Concepedia

Concepedia

Publication | Open Access

Importing ArrayExpress datasets into R/Bioconductor

DOI Full Paper Access

99

Citations

7

References

2009

Year

Audrey Kauffmann, Tim F. Rayner, Helen Parkinson, Misha Kapushesky, Margus Lukk, Alvis Brāzma, Wolfgang Huber

Abstract

The ArrayExpress package is available from the Bioconductor project at http://www.bioconductor.org. A users guide and examples are provided with the package.

References

	Year	Citations
Bioconductor: open software development for computational biology and bioinformatics Robert Gentleman, Vincent J. Carey, Douglas M. Bates, Genome biology	2004	12.4K
Minimum information about a microarray experiment (MIAME)—toward standards for microarray data Alvis Brāzma, Pascal Hingamp, John Quackenbush, Nature Genetics Biological DataMicroarray ExperimentOmicsBiostatisticsMinimum Information	2001	4.1K
GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor Sean Davis, Paul S. Meltzer Bioinformatics	2007	3.4K
arrayQualityMetrics—a bioconductor package for quality assessment of microarray data Audrey Kauffmann, Robert Gentleman, Wolfgang Huber Bioinformatics	2008	947
ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression Helen Parkinson, Misha Kapushesky, N. N. Kolesnikov, Nucleic Acids Research	2008	421
MergeMaid: R Tools for Merging and Cross-Study Validation of Gene Expression Data Leslie Cope, Xiaogang Zhong, Elizabeth Garrett, Statistical Applications in Genetics and Molecular Biology EngineeringGeneticsData VisualizationTranscriptomics TechnologyGenomics	2004	38
Importing MAGE-ML format microarray data into BioConductor Steffen Durinck, Joke Allemeersch, Vincent J. Carey, Bioinformatics	2004	12

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