New Phytologist · 2015 · 307 citations · 19 references
Life SciencesBioengineeringBiotechnologyGenetic EngineeringPlant BiotechnologySynthetic BiologyDna AssemblyMicrobial Synthetic BiologyMolecular Cloning WorkflowsPlant Synthetic BiologyRestriction Enzyme TechnologySequence AssemblyAssembly ProcedureBiobricks AssemblyDna Assembly StandardsDna Construct EngineeringDna Part StandardizationSynthetic Dna ConstructionSynthetic Pathway AssemblyType Iis Restriction Enzymes
Standardization enables interchangeable components, and the BioBrick standard for DNA assembly was a landmark in synthetic biology. The authors propose a Type IIS restriction endonuclease-based standard with 12 fusion sites to facilitate assembly of eukaryotic transcriptional units and envision a comprehensive catalogue of standardized DNA parts to accelerate plant bioengineering. The standard was developed and agreed upon by international plant science and synthetic biology leaders, including inventors, developers, and adopters of Type IIS cloning methods.
Inventors in the field of mechanical and electronic engineering can access multitudes of components and, thanks to standardization, parts from different manufacturers can be used in combination with each other. The introduction of BioBrick standards for the assembly of characterized DNA sequences was a landmark in microbial engineering, shaping the field of synthetic biology. Here, we describe a standard for Type IIS restriction endonuclease-mediated assembly, defining a common syntax of 12 fusion sites to enable the facile assembly of eukaryotic transcriptional units. This standard has been developed and agreed by representatives and leaders of the international plant science and synthetic biology communities, including inventors, developers and adopters of Type IIS cloning methods. Our vision is of an extensive catalogue of standardized, characterized DNA parts that will accelerate plant bioengineering.
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Enzymatic assembly of DNA molecules up to several hundred kilobases
Daniel G. Gibson, Lei Young, Ray-Yuan Chuang et al. · Nature Methods · 2009 · 10.9K citations
A Modular Cloning System for Standardized Assembly of Multigene Constructs
E. Weber, Carola Engler, Ramona Gruetzner et al. · PLoS ONE · 2011 · 1.5K citations · Full text
Golden Gate Shuffling: A One-Pot DNA Shuffling Method Based on Type IIs Restriction Enzymes
Carola Engler, Ramona Gruetzner, Romy Kandzia et al. · PLoS ONE · 2009 · 1.1K citations · Full text
A Golden Gate Modular Cloning Toolbox for Plants
Carola Engler, Mark Youles, Ramona Gruetzner et al. · ACS Synthetic Biology · 2014 · 1K citations