PROTEOMICS · 2015 · 16 citations · 30 references
Life SciencesBiochemistryMicrobiologyBacteriologyPeriodontal PathogenesisProteomicsBacterial PathogenesisBacterial Secretion SystemsMembrane ProteinsMembrane ProteomicsMicrobial Cell StructureMicrobial ProteomicsIntegral Membrane ProteinsMass Spectrometry-based Membrane ProteomicsMembrane Protein AnalysisMembrane Protein BiogenesisMembrane Protein Quality ControlProtein Secretion SystemsShotgun Membrane ProteomicsSoluble Protein Secretion
Aggregatibacter actinomycetemcomitans is an important pathogen in the etiology of human periodontal and systemic diseases. Inactivation of the gene coding for the inner membrane protein, morphogenesis protein C (MorC), results in pleotropic effects pertaining to the membrane structure and function of this bacterium. The role of this protein in membrane biogenesis is unknown. To begin to understand the role of this conserved protein, stable isotope dimethyl labeling in conjunction with MS was used to quantitatively analyze differences in the membrane proteomes of the isogenic mutant and wild-type strain. A total of 613 proteins were quantified and 601 of these proteins were found to be equal in abundance between the two strains. The remaining 12 proteins were found in lesser (10) or greater (2) abundance in the membrane preparation of the mutant strain compared with the wild-type strain. The 12 proteins were ascribed functions associated with protein quality control systems, oxidative stress responses, and protein secretion. The potential relationship between these proteins and the phenotypes of the MorC mutant strain is discussed.
30
Gene Ontology: tool for the unification of biology
Michael Ashburner, Catherine A. Ball, Judith A. Blake et al. · Nature Genetics · 2000 · 44.6K citations · Full text
Yuichi Taniguchi, Paul Choi, Gene‐Wei Li et al. · Science · 2010 · 2.1K citations · Full text
Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
Paul J. Boersema, Reinout Raijmakers, Simone Lemeer et al. · Nature Protocols · 2009 · 1.4K citations
The Transporter Classification Database (TCDB): recent advances
Milton H. Saier, Vamsee Reddy, Brian V. Tsu et al. · Nucleic Acids Research · 2015 · 1.1K citations · Full text