Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 22.5K citations · Full text

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.1K citations

Developmental Biology, Functional Genomics, Rna Biology +10

Mapping and quantifying mammalian transcriptomes by RNA-Seq

A Mortazavi, Brian A. Williams, Kenneth McCue et al. · Nature Methods · 2008 · 14K citations

Functional Genomics, Genetics, Transcriptomics Technology +7

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12K citations · Full text

KAAS: an automatic genome annotation and pathway reconstruction server

Yuki Moriya, Masumi Itoh, Shujiro Okuda et al. · Nucleic Acids Research · 2007 · 4.2K citations · Full text