Mfold web server for nucleic acid folding and hybridization prediction

Michael Zuker

Nucleic Acids Research

Web ServerDna SequencingEngineeringBiological DatabaseStructural Bioinformatics +12

Mechanical and chemical unfolding of a single protein: A comparison

Mariano Carrión‐Vázquez, Andrés F. Oberhauser, Susan B. Fowler, +4

Proceedings of the National Academy of Sciences

Protein ChemistryUnfolding RatesProtein AssemblyChemical UnfoldingProtein Folding +12

Direct observation of base-pair stepping by RNA polymerase

Elio A. Abbondanzieri, William J. Greenleaf, Joshua W. Shaevitz, +2

Nature

Natural SciencesRna Structure PredictionDirect ObservationRna BiologyDna Replication +2

A Slow RNA Polymerase II Affects Alternative Splicing In Vivo

Manuel de la Mata, Claudio R. Alonso, Sebastián Kadener, +6

Molecular Cell

Transcriptional RegulationNatural SciencesGeneticsRna SplicingRna Biology +5

Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals

Irina Artsimovitch, Robert Landick

Proceedings of the National Academy of Sciences

Backtracking by single RNA polymerase molecules observed at near-base-pair resolution

Joshua W. Shaevitz, Elio A. Abbondanzieri, Robert Landick, +1

Nature

EngineeringNatural SciencesRna Structure PredictionRna BiologyMolecular Biology +5

Transcriptional arrest: <i>Escherichia coli</i> RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded

N. V. Komissarova, Mikhail Kashlev

Proceedings of the National Academy of Sciences

Molecular BiologyGene TranscriptionRna IntactTranscriptional RegulationRna Polymerase +15

Single-Molecule Study of Transcriptional Pausing and Arrest by <i>E. coli</i> RNA Polymerase

R. John, Davenport, Gijs J. L. Wuite, +2

Science

Rna ProcessingTranscriptional RegulationNatural SciencesRna Structure PredictionRna Polymerase +13

Mechanism of Intrinsic Transcription Termination and Antitermination

William S. Yarnell, Jeffrey W. Roberts

Science

Rna ProcessingTranscriptional RegulationSystems BiologyIntrinsic Transcription TerminationNatural Sciences +12

Ubiquitous Transcriptional Pausing Is Independent of RNA Polymerase Backtracking

Keir C. Neuman, Elio A. Abbondanzieri, Robert Landick, +2

Cell

Transcriptional RegulationRna Polymerase BacktrackingNatural SciencesRna BiologyMolecular Biology +5