INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2011 · 60 citations · 31 references
Life SciencesBiologyMicrobiologyBacteriologyMarine MicrobiologyMicrobial Ecology16S Ribosomal Ribonucleic Acid AnalysisMarine BacteriologyMicrobial PhylogeneticsMicrobial PhylogenyMolecular Phylogeny16S Rrna Gene PhylogenyAgarMarine Bacterial DiversityMarine Bacterial TaxonomyPhylogenetic Character AnalysisSequence SimilaritySystematics Of Marine MicroorganismsType Strain Characterization
A Gram-negative, non-motile, non-spore-forming, halophilic rod, designated JPCCMB0017(T), was isolated from a marine sediment of the coastal area of Okinawa, Japan. The isolate formed orange-red colonies on marine agar. Bacteriochlorophyll α was absent and sphingoglycolipid 1 and other carotenoids, including astaxanthin, adonixanthin and zeaxanthin, were present. Ubiquinone-10 (Q-10) was the main respiratory quinone and C(18:1)ω7c was the major cellular fatty acid. The G+C content of DNA was 59.1 mol%. Phylogenetic analysis based on 16S rRNA gene sequencing revealed that the isolate was a member of the genus Altererythrobacter in the family Erythrobacteraceae. Strain JPCCMB0017(T) exhibited 96.8% 16S rRNA gene sequence similarity with Altererythrobacter marinus H32(T). Unlike other members of the genus Altererythrobacter, strain JPCCMB0017(T) reduced nitrate. On the basis of genotypic and phenotypic data, a novel species is proposed to accommodate this isolate, with the name Altererythrobacter ishigakiensis sp. nov. The type strain is JPCCMB0017(T) (= NITE-AP48(T)= ATCC BAA-2084(T)=NBRC 107699(T)).
31
Basic local alignment search tool
Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations
Molecular cloning: A laboratory manual
Prescott L. Deininger · Analytical Biochemistry · 1990 · 86.2K citations
Julie Thompson, Desmond G. Higgins, Toby J. Gibson · Nucleic Acids Research · 1994 · 64.9K citations · Full text