Standards in Genomic Sciences · 2015 · 12 citations · 31 references
BiologyDraft Genome SequenceMicrobial DiversityMicrobial SystematicsFlorida KeysReef-building CoralsMarine GenomicsMicrobial ConsortiaMicrobial EcologySurface MicrobiotaEnvironmental MicrobiologyHalomonas Meridiana R1t3MicrobiologyMicrobiomeMedicineMicrobial EvolutionMicrobial Genetics
Members of the gammaproteobacterial genus Halomonas are common in marine environments. Halomonas and other members of the Oceanospirillales have recently been identified as prominent members of the surface microbiota of reef-building corals. Halomonas meridiana strain R1t3 was isolated from the surface mucus layer of the scleractinian coral Acropora palmata in 2005 from the Florida Keys. This strain was chosen for genome sequencing to provide insight into the role of commensal heterotrophic bacteria in the coral holobiont. The draft genome consists of 290 scaffolds, totaling 3.5 Mbp in length and contains 3397 protein-coding genes.
31
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 64.7K citations · Full text
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 58.3K citations · Full text
Long-read Sequencing, Sequence Assembly, Natural Sciences +7
Gene Ontology: tool for the unification of biology
Michael Ashburner, Catherine A. Ball, Judith A. Blake et al. · Nature Genetics · 2000 · 43.3K citations · Full text
Functional Genomics, Engineering, Bioinformatics Database +11
Koichiro Tamura, Daniel G. Peterson, Nora Peterson et al. · Molecular Biology and Evolution · 2011 · 40.1K citations · Full text
Maximum Parsimony Methods, Comparative Genomics, Genetics +20