2004 · 139 citations · 14 references
ComputingBiomedical InformaticsComputer ScienceBiomedical Text MiningMachine LearningNatural Language ProcessingInformation ExtractionKnowledge ExtractionNamed Entity RecognitionProtein Mention DetectionBiomedical Information ExtractionConditional Random FieldsGraphical ModelsInformation Extraction From Biomedical TextInformation Extraction From TextProtein Mention ExtractionProtein Named Entity Recognition
Most information extraction (IE) systems treat separate potential extractions as independent. However, in many cases, considering influences between different potential extractions could improve overall accuracy. Statistical methods based on undirected graphical models, such as conditional random fields (CRFs), have been shown to be an effective approach to learning accurate IE systems. We present a new IE method that employs Relational Markov Networks (a generalization of CRFs), which can represent arbitrary dependencies between extractions. This allows for "collective information extraction" that exploits the mutual influence between possible extractions. Experiments on learning to extract protein names from biomedical text demonstrate the advantages of this approach.
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Shallow parsing with conditional random fields
Fei Sha, Fernando Pereira · 2003 · 1.3K citations · Full text
Generalized Belief Propagation
Jonathan S. Yedidia, William T. Freeman, Yair Weiss · 2000 · 916 citations