Concepedia

Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites

Alasdair T. R. Laurie, Robert M. Jackson

Computer applications in the biosciences · 2005 · 1.1K citations · 47 references

Open access

Abstract

Both Q-SiteFinder and Pocket-Finder have been made available online at http://www.bioinformatics.leeds.ac.uk/qsitefinder and http://www.bioinformatics.leeds.ac.uk/pocketfinder

References

47

The Protein Data Bank

Helen M. Berman · Nucleic Acids Research · 2000 · 38.9K citations

Biological Database, Biochemistry, Structural Bioinformatics +12

SCOP: A structural classification of proteins database for the investigation of sequences and structures

Alexey G. Murzin, Steven E. Brenner, Tim Hubbard et al. · Journal of Molecular Biology · 1995 · 6.3K citations

Structural Classification, Structural Bioinformatics, Proteins Database +13

A computational procedure for determining energetically favorable binding sites on biologically important macromolecules

P. J. Goodford · Journal of Medicinal Chemistry · 1985 · 2.6K citations

Engineering, Probe Group, Computational Chemistry +17

An Evolutionary Trace Method Defines Binding Surfaces Common to Protein Families

Olivier Lichtarge, Henry R. Bourne, Fred E. Cohen · Journal of Molecular Biology · 1996 · 1.2K citations

Protein Families, Protein Assembly, Protein Folding +13

Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design

Jie Liang, Clare Woodward, Herbert Edelsbrunner · Protein Science · 1998 · 1K citations · Full text