Nature Biotechnology · 2010 · 388 citations · 27 references
Life SciencesEntomologyGeneticsEpigeneticsEpigenomicsGenomicsDevelopmental EpigenomicsDna Methylation ProfilingEpigenetic Regulation In DevelopmentEpigenomic Data AnalysisEpigenomic ProfilingDna Methylation MappingEpigenomic AnalysisGenome-wide Methylation AnalysisGenome-wide Methylation ProfilingMethylome Profiling
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Human DNA methylomes at base resolution show widespread epigenomic differences
Ryan Lister, Mattia Pelizzola, Robert H. Dowen et al. · Nature · 2009 · 4.8K citations · Full text
SOAP2: an improved ultrafast tool for short read alignment
Ruiqiang Li, Chang Yu, Yingrui Li et al. · Bioinformatics · 2009 · 3.9K citations
SOAP: short oligonucleotide alignment program
Ruiqiang Li, Yingrui Li, Karsten Kristiansen et al. · Bioinformatics · 2008 · 3.7K citations · Full text
WEGO: a web tool for plotting GO annotations
Jia Ye, Lin Fang, Hongkun Zheng et al. · Nucleic Acids Research · 2006 · 2.8K citations · Full text
Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
Ryan Lister, Ronan C. O’Malley, Julian Tonti‐Filippini et al. · Cell · 2008 · 2.5K citations · Full text