Genome sequencing and comparative analysis of three Chlamydia pecorum strains associated with different pathogenic outcomes

Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 92.8K citations

Bioinformatics, Engineering, Information Retrieval +10

MUSCLE: multiple sequence alignment with high accuracy and high throughput

R. C. Edgar · Nucleic Acids Research · 2004 · 45.3K citations · Full text

Genetics, Molecular Biology, Genomics +17

MrBayes 3: Bayesian phylogenetic inference under mixed models

Fredrik Ronquist, John P. Huelsenbeck · Bioinformatics · 2003 · 29.1K citations · Full text

Biology, Phylogenetics, Molecular Ecology +14

The Pfam Protein Families Database

Alex Bateman · Nucleic Acids Research · 2002 · 14.2K citations · Full text

Bioinformatics, Biochemistry, Structural Bioinformatics +12

Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt, Gwo-Liang Chen, Philip LoCascio et al. · BMC Bioinformatics · 2010 · 12.2K citations · Full text