Concepedia
BMC Genomics · 2013 · 106 citations · 94 references
Open access
94
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
Koichiro Tamura, Daniel G. Peterson, Nora Peterson et al. · Molecular Biology and Evolution · 2011 · 40.1K citations · Full text
Maximum Parsimony Methods, Comparative Genomics, Genetics +20
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis · Bioinformatics · 2006 · 15.7K citations · Full text
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.4K citations · Full text
Bioinformatics, Gene Sequence Annotation, Natural Sciences +14
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
Bioinformatics · 2005 · 11.8K citations · Full text
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
Todd M. Lowe, Sean R. Eddy · Nucleic Acids Research · 1997 · 11K citations · Full text