The Open Microbiology Journal · 2009 · 32 citations · 29 references
Life SciencesBiologyMicrobiologyMicrobial EcologyMicrobial SystematicsMicrobial Taxonomy16S Ribosomal Ribonucleic Acid AnalysisMicrobial DiversityMicrobial PhylogeneticsMicrobial PhylogenyProkaryotic Classification16S Rrna Gene PhylogenyCulture-dependent Community AnalysisCulture-dependent Microbial AnalysisCulture-independent TaxonomyGenus DelineationGenus IdentificationMicrobial Diversity AssessmentSpring Water Chemistry
Microbial communities in an acidic hot spring, namely Kawah Hujan B, at Kamojang geothermal field, West Java-Indonesia was examined using culture dependent and culture independent strategies. Chemical analysis of the hot spring water showed a characteristic of acidic-sulfate geothermal activity that contained high sulfate concentrations and low pH values (pH 1.8 to 1.9). Microbial community present in the spring was characterized by 16S rRNA gene combined with denaturing gradient gel electrophoresis (DGGE) analysis. The majority of the sequences recovered from culture-independent method were closely related to Crenarchaeota and Proteobacteria phyla. However, detail comparison among the member of Crenarchaeota showing some sequences variation compared to that the published data especially on the hypervariable and variable regions. In addition, the sequences did not belong to certain genus. Meanwhile, the 16S Rdna sequences from culture-dependent samples revealed mostly close to Firmicute and gamma Proteobacteria.
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Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations
Julie Thompson, Desmond G. Higgins, Toby J. Gibson · Nucleic Acids Research · 1994 · 64.9K citations · Full text
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Stephen F. Altschul · Journal of Molecular Biology · 1990 · 13.9K citations