Parasitology · 2004 · 314 citations · 32 references
Veterinary MedicineInfectious DiseasesVeterinary MicrobiologyComparative GeneticsComparative Infectious DiseasesDiagnostic MicrobiologyPhylogenetic EpidemiologyPhylogenomic AnalysisPhylogenetic Character AnalysisPhylogenetic Comparison Of PathogensPhylogenetic Diversity AnalysisZoonotic Transmission Pathways
Giardia duodenalis isolates recovered from humans and dogs living in the same locality in a remote tea-growing community of northeast India were characterized at 3 different loci; the SSU-rDNA, elongation factor 1-alpha (ef1-alpha) and triose phosphate isomerase (tpi) gene. Phylogenetic analysis of the SSU-rDNA and efl-alpha genes provided poor genetic resolution of the isolates within various assemblages, stressing the importance of using multiple loci when inferring genotypes to Giardia. Analysis of the tpi gene provided better genetic resolution and placed canine Giardia isolates within the genetic groupings of human isolates (Assemblages A and B). Further evidence for zoonotic transmission was supported by epidemiological data showing a highly significant association between the prevalence of Giardia in humans and presence of a Giardia-positive dog in the same household (odds ratio 3.01, 95% CI, 1.11, 8.39, P = 0.0000).
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Julie Thompson, Desmond G. Higgins, Toby J. Gibson · Nucleic Acids Research · 1994 · 64.9K citations · Full text
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MEGA2: molecular evolutionary genetics analysis software
Sudhir Kumar, Koichiro Tamura, Ingrid B. Jakobsen et al. · Bioinformatics · 2001 · 6.1K citations · Full text