Proceedings of the National Academy of Sciences · 2012 · 394 citations · 79 references
Life SciencesEcologyMicrobiologyCommunity EcologyMicrobial EcologyPlant EcologyFungal DiversityMicrobial BiogeographyMicrobial Community DynamicsMicrobial DiversityPlant Community EcologyPlant-associated Microbial CommunitiesEndophyte Community StructureEndophytic Fungal DiversityEndophytic FungiEndophytic Microbial CommunitiesEnvironmental FactorsFungal Community DiversityFungal Community EcologyMicrobial Community Diversity
We surveyed endophytic fungal communities in leaves of a single tree species (Metrosideros polymorpha) across wide environmental gradients (500-5,500 mm of rain/y; 10-22 °C mean annual temperature) spanning short geographic distances on Mauna Loa Volcano, Hawai'i. Using barcoded amplicon pyrosequencing at 13 sites (10 trees/site; 10 leaves/tree), we found very high levels of diversity within sites (a mean of 551 ± 134 taxonomic units per site). However, among-site diversity contributed even more than did within-site diversity to the overall richness of more than 4,200 taxonomic units observed in M. polymorpha, and this among-site variation in endophyte community composition correlated strongly with temperature and rainfall. These results are consistent with suggestions that foliar endophytic fungi are hyperdiverse. They further suggest that microbial diversity may be even greater than has been assumed and that broad-scale environmental controls such as temperature and rainfall can structure eukaryotic microbial diversity. Appropriately constrained study systems across strong environmental gradients present a useful means to understand the environmental factors that structure the diversity of microbial communities.
79
Basic local alignment search tool
Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations
MUSCLE: multiple sequence alignment with high accuracy and high throughput
R. C. Edgar · Nucleic Acids Research · 2004 · 46.5K citations · Full text
Patrick D. Schloss, Sarah L. Westcott, Thomas Ryabin et al. · Applied and Environmental Microbiology · 2009 · 21.8K citations · Full text
Non‐parametric multivariate analyses of changes in community structure
K.R. Clarke · Australian Journal of Ecology · 1993 · 14.1K citations
A new method for non‐parametric multivariate analysis of variance
Marti J. Anderson · Austral Ecology · 2001 · 13.3K citations