Molecular & Cellular Proteomics · 2006 · 14 citations · 27 references
Life SciencesCell BiologyMolecular BiologyCell SignalingProteomicsSignal TransductionCell Signaling NetworksSubcellular ProteomicsGateway CloningHigh-throughput Expression PlatformsPlasmid BackbonesPlasmid Library ConstructionProtein Subcellular LocalizationSignaling Network DatabasesSpatial ProteomicsSubcellular Localization Mapping
Cellular responses to inputs that vary both temporally and spatially are determined by complex relationships between the components of cell signaling networks. Analysis of these relationships requires access to a wide range of experimental reagents and techniques, including the ability to express the protein components of the model cells in a variety of contexts. As part of the Alliance for Cellular Signaling, we developed a robust method for cloning large numbers of signaling ORFs into Gateway entry vectors, and we created a wide range of compatible expression platforms for proteomics applications. To date, we have generated over 3000 plasmids that are available to the scientific community via the American Type Culture Collection. We have established a website at www.signaling-gateway.org/data/plasmid/ that allows users to browse, search, and blast Alliance for Cellular Signaling plasmids. The collection primarily contains murine signaling ORFs with an emphasis on kinases and G protein signaling genes. Here we describe the cloning, databasing, and application of this proteomics resource for large scale subcellular localization screens in mammalian cell lines.
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Primer3 on the WWW for General Users and for Biologist Programmers
Steve Rozen, Helen Skaletsky · Humana Press eBooks · 2003 · 15.1K citations
Initial sequencing and comparative analysis of the mouse genome
Towards a proteome-scale map of the human protein–protein interaction network
Jean‐François Rual, K. Venkatesan, Tong Hao et al. · Nature · 2005 · 3K citations
‘Touchdown’ PCR to circumvent spurious priming during gene amplification
R.H. Don, Peter Cox, Brandon J. Wainwright et al. · Nucleic Acids Research · 1991 · 2.6K citations · Full text