Nature Communications · 2015 · 151 citations · 37 references
MedicineEvolutionary BiologyGeneticsCancer GeneticsCarcinogenesisMetastasisCancer ProgressionCancer Stem Cell BiologyClonal EvolutionIntratumoral HeterogeneityMetastatic HeterogeneityCancer Metastasis MechanismsClonal Evolution Of MetastasesGenetic ConstraintsIntratumor Genetic HeterogeneityLoss-of-function MutationsMetastatic EvolutionPositive SelectionTumor Evolutionary Dynamics
Theoretical reasoning suggests that cancer may result from a knockdown of the genetic constraints that evolved for the maintenance of metazoan multicellularity. By characterizing the whole-life history of a xenograft tumour, here we show that metastasis is driven by positive selection for general loss-of-function mutations on multicellularity-related genes. Expression analyses reveal mainly downregulation of multicellularity-related genes and an evolving expression profile towards that of embryonic stem cells, the cell type resembling unicellular life in its capacity of unlimited clonal proliferation. Also, the emergence of metazoan multicellularity ~600 Myr ago is accompanied by an elevated birth rate of cancer genes, and there are more loss-of-function tumour suppressors than activated oncogenes in a typical tumour. These data collectively suggest that cancer represents a loss-of-function-driven reverse evolution back to the unicellular ‘ground state’. This cancer evolution model may account for inter-/intratumoural genetic heterogeneity, could explain distant-organ metastases and hold implications for cancer therapy. Multicellularity relies on molecular mechanisms that promote cooperation of individual cells and limit their inappropriate expansion. Here Chen et al. show that genes unique to multicellular organisms are preferentially inactivated during tumour evolution.
37
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
Comprehensive molecular portraits of human breast tumours
Genome sequencing in microfabricated high-density picolitre reactors
Marcel Margulies, William E. Altman, Said Attiya et al. · Nature · 2005 · 7.7K citations · Full text