INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2002 · 96 citations · 18 references
Life SciencesMicrobiologyVeterinary MicrobiologyMicrobial EcologyMicrobial TaxonomyPhylogenetics16S Ribosomal Ribonucleic Acid PhylogenyMicrobial PhylogenyMolecular PhylogenyPhylogenetic ClassificationPhylogenetic Sequence AnalysisTaxonomic Classification16S Ribosomal Ribonucleic Acid Phylogenetics16S Rrna Gene PhylogenyCandidatus TaxaNucleotide Sequence AlignmentParasite PhylogeneticsPhylogenetic Comparison Of PathogensRelatedness StructureSequence Similarity Scoring
The 16S rRNA sequence of newly characterized haemotrophic bacteria in an opossum (Didelphis virginiana) and alpaca (Lama pacos) was determined. In addition, the 16S rRNA sequence of a haemotrophic parasite in the dog (Canis familiaris) was determined. Sequence alignment and evolutionary analysis as well as secondary structural similarity and signature nucleotide sequence motifs of their 16S rRNA genes, positioned these organisms in the genus Mycoplasma. The highest scoring sequence similarities were 16S rRNA genes from haemotrophic mycoplasma species (Haemobartonella and Eperythrozoon spp.). However, the lack of several higher-order structural idiosyncrasies used to define the pneumoniae group, suggests that these organisms and related haemotrophic mycoplasmas represent a new group of mycoplasmas. It is recommended that the organisms be named 'Candidatus Mycoplasma haemodidelphidis', 'Candidatus Mycoplasma haemolamae' and Mycoplasma haemocanis comb. nov., to provide some indication of the target cell and host species of these parasites, and to reflect their phylogenetic affiliation.
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A comprehensive set of sequence analysis programs for the VAX
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16S ribosomal DNA amplification for phylogenetic study
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