Flexible Multi-scale Fitting of Atomic Structures into Low-resolution Electron Density Maps with Elastic Network Normal Mode Analysis

VMD: Visual molecular dynamics

William Humphrey, Andrew Dalke, Klaus Schulten · Journal of Molecular Graphics · 1996 · 64.1K citations

Engineering, Visual Molecular Dynamics, Molecular Biology +5

Anisotropy of Fluctuation Dynamics of Proteins with an Elastic Network Model

Stewart R. Durell, Robert L. Jernigan, Melik C. Demirel et al. · Biophysical Journal · 2001 · 1.7K citations · Full text

Biophysical Modeling, Protein Folding, Natural Sciences +10

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

Monique M. Tirion · Physical Review Letters · 1996 · 1.6K citations

Biophysical Modeling, Single Molecule Biophysics, Biochemistry +14

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

İvet Bahar, Ali Rana Atılgan, Burak Erman · Folding and Design · 1997 · 1.4K citations

Thermal Fluctuations, Protein Chemistry, Biochemistry +11

Conformational change of proteins arising from normal mode calculations

Florence Tama, Yves‐Henri Sanejouand · Protein Engineering Design and Selection · 2001 · 886 citations

Protein Chemistry, Normal Modes, Protein Assembly +13