Molecular Biology and Evolution · 2004 · 47 citations · 42 references
Life SciencesEvolutionary BiologyMolecular BiologyGene ExpressionMolecular EvolutionReproductive GeneticsEvolutionNatural SelectionProtein EvolutionMolecular Character EvolutionMolecular ClustersPositive SelectionPositive Selection RegimesProtease EvolutionTransmembrane Proteins
Many genes with a role in reproduction, including those implicated in fertilization and spermatogenesis, have been shown to evolve at a faster rate relative to genes associated with other functions and tissues. These survey studies usually group a wide variety of genes with different characteristics and evolutionary histories as reproductive genes based on their site of expression or function. We have examined the molecular evolution of the ADAM (a disintegrin and metalloprotease) gene family, a structurally and functionally diverse group of genes expressed in reproductive and somatic tissue to test whether a variety of protein characteristics such as phylogenetic clusters, tissue of expression, and proteolytic and adhesive function can group fast evolving ADAM genes. We found that all genes were evolving under purifying selection (d(N)/d(S) < 1), although reproductive ADAMs, including those implicated in fertilization and spermatogenesis, evolved at the fastest rate. Genes with a role in binding to cell receptors in endogenous tissue appear to be evolving under purifying selection, regardless of the tissue of expression. In contrast, positive selection of codon sites in the disintegrin/cysteine-rich adhesion domains was detected exclusively in ADAMs 2 and 32, two genes expressed in the testis with a potential role in sperm-egg adhesion. Positive selection was detected in the transmembrane/cytosolic tail region of ADAM genes expressed in a variety of tissues.
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MEGA2: molecular evolutionary genetics analysis software
Sudhir Kumar, Koichiro Tamura, Ingrid B. Jakobsen et al. · Bioinformatics · 2001 · 6.1K citations · Full text
Codon-Substitution Models for Heterogeneous Selection Pressure at Amino Acid Sites
Ziheng Yang, Rasmus Nielsen, Nick Goldman et al. · Genetics · 2000 · 2.4K citations · Full text