PLoS ONE · 2011 · 140 citations · 51 references
We have identified large numbers of miRNAs and their related target genes through deep sequencing of a small RNA library. This study of the identification and characterization of miRNAs in peanut can initiate further study on peanut miRNA regulation mechanisms, and help toward a greater understanding of the important roles of miRNAs in peanut.
51
Mfold web server for nucleic acid folding and hybridization prediction
Michael Zuker · Nucleic Acids Research · 2003 · 13.4K citations · Full text
miRBase: microRNA sequences, targets and gene nomenclature
Sam Griffiths‐Jones · Nucleic Acids Research · 2005 · 4.8K citations · Full text
miRBase: tools for microRNA genomics
Sam Griffiths‐Jones, Harpreet K. Saini, Stijn van Dongen et al. · Nucleic Acids Research · 2007 · 4.4K citations · Full text
SOAP2: an improved ultrafast tool for short read alignment
Ruiqiang Li, Chang Yu, Yingrui Li et al. · Bioinformatics · 2009 · 3.9K citations