Concepedia

Sequence-based prediction of protein-binding sites in DNA: Comparative study of two SVM models

Byungkyu Park, Jinyong Im, Narankhuu Tuvshinjargal, Wook Lee, Kyungsook Han

Computer Methods and Programs in Biomedicine · 2014 · 18 citations · 15 references

Concepts

Life SciencesBioinformaticsMolecular BiologyComputational BiologyGenomicsBinding Affinity PredictionNucleic Acid ModelingProtein-nucleic Acid InteractionsBinding Site ModelingBinding Site PredictionInteraction Site PredictionProtein-dna Binding Site PredictionProtein-dna Interaction ModelingProtein-ligand Binding SitesSequence PredictionSequence-based Prediction

References

15

LIBSVM

Chih-Chung Chang, Chih‐Jen Lin · ACM Transactions on Intelligent Systems and Technology · 2011 · 41.3K citations

Computing, Computer Science, Machine Learning +12

CD-HIT Suite: a web server for clustering and comparing biological sequences

Ying Huang, Beifang Niu, Ying Gao et al. · Bioinformatics · 2010 · 2.7K citations · Full text

Life Sciences, Bioinformatics, Computational Biology +13

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

Anthony Mathelier, Xiaobei Zhao, Allen W. Zhang et al. · Nucleic Acids Research · 2013 · 1K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +11

FaBox: an online toolbox for <scp>fasta</scp> sequences

Palle Villesen · Molecular Ecology Notes · 2007 · 852 citations

Life Sciences, Bioinformatics, Genetics +10

The RCSB Protein Data Bank: redesigned web site and web services

Peter W. Rose, Bojan Beran, Wolfgang F. Bluhm et al. · Nucleic Acids Research · 2010 · 672 citations · Full text

Life Sciences, Biochemistry, Bioinformatics +15