Concepedia

Binding Site Modeling

Binding Site Modeling is a computational method within homology modeling that specifically predicts the three-dimensional arrangement of amino acid residues involved in molecular interactions by leveraging structural templates of evolutionarily related proteins.

597

Publications

27.9K

Citations

2.5K

Authors

880

Institutions

Publications per year

2017–2026

93

Parents

Publications

597

Site-binding model of the electrical double layer at the oxide/water interface

David E. Yates, S. Levine, Thomas W. Healy · Journal of the Chemical Society Faraday Transactions 1 Physical Chemistry in Condensed Phases · 1974 · 1.3K citations

, , +17

An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences

Charles E. Lawrence, Andrew Reilly · Proteins Structure Function and Bioinformatics · 1990 · 544 citations

, , +13

Functionality maps of binding sites: A multiple copy simultaneous search method

Andrew D. Miranker, Martin Karplus · Proteins Structure Function and Bioinformatics · 1991 · 543 citations

, , +17

<i>CheckMyMetal</i>: a macromolecular metal-binding validation tool

Heping Zheng, David R. Cooper, Przemyslaw Porebski et al. · Acta Crystallographica Section D Structural Biology · 2017 · 343 citations · Full text

, , +16

The Automatic Search for Ligand Binding Sites in Proteins of Known Three-dimensional Structure Using only Geometric Criteria

Jana Fauck, Cornelius Frömmel · Journal of Molecular Biology · 1996 · 245 citations

, , +15

1–5 of 597

Authors

2.5K

  1. BK
    Brian K. Shoichet

    University of California, San Francisco, United States

    5 publications · 744 citations

    5

    h-index

  2. JM
    Jerry M. Anchin

    Texas A&M University, United States

    4 publications · 59 citations

    4

    h-index

  3. GN
    Gunnar Nordvall

    Uppsala University, Sweden

    4 publications · 189 citations

    4

    h-index

  4. WA
    William A. Goddard

    California Institute of Technology, United States

    3 publications · 63 citations

    3

    h-index

  5. GD
    Gary D. Stormo

    Washington University in St. Louis, United States

    3 publications · 269 citations

    3

    h-index

1–5 of 2.5K

Institutions

880

  1. Centre National de la Recherche Scientifique

    Paris, France

    13 h-index

    51 publications

    3.4K citations

  2. Uppsala University

    Uppsala, Sweden

    10 h-index

    17 publications

    923 citations

  3. University of Cambridge

    Cambridge, United Kingdom

    10 h-index

    22 publications

    898 citations

  4. University of Oxford

    Oxford, United Kingdom

    9 h-index

    19 publications

    1.2K citations

  5. Harvard University

    Cambridge, United States

    8 h-index

    20 publications

    2.4K citations

  6. University of California San Diego

    San Diego, United States

    8 h-index

    18 publications

    990 citations

  7. University of Michigan

    Ann Arbor, United States

    8 h-index

    16 publications

    885 citations

  8. Jilin University

    Changchun, China

    7 h-index

    28 publications

    782 citations

1–8 of 880

Venues

  1. Proteins Structure Function and Bioinformatics

    29 publications · 2.7K citations

    22

    h-index

  2. Journal of Biological Chemistry

    JBC · 27 publications · 1.7K citations

    21

    h-index

  3. Journal of Molecular Biology

    JMB · 21 publications · 1.6K citations

    16

    h-index

  4. Journal of Chemical Information and Modeling

    JCIM · 22 publications · 653 citations

    16

    h-index

  5. Protein Engineering Design and Selection

    PEDS · 20 publications · 597 citations

    15

    h-index

1–5