Concepedia

Unique features of the m6A methylome in Arabidopsis thaliana

Guan‐Zheng Luo, Alice MacQueen, Guanqun Zheng, Hong‐Chao Duan, Louis C. Doré, Zhike Lu, Jun Liu, Kai Chen, Guifang Jia, Joy Bergelson,

Nature Communications · 2014 · 493 citations · 38 references

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38

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text

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Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

Sven Heinz, Christopher Benner, Nathanael J. Spann et al. · Molecular Cell · 2010 · 14.6K citations · Full text

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell, Adam Roberts, Loyal A. Goff et al. · Nature Protocols · 2012 · 12.9K citations · Full text

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affy—analysis of <i>Affymetrix GeneChip</i> data at the probe level

Laurent Gautier, Leslie Cope, Benjamin M. Bolstad et al. · Bioinformatics · 2004 · 5.4K citations · Full text

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