<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth

Bioinformatics

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

Mark S. Longtine, Amos Mckenzie, Douglas J. DeMarini, +5

Yeast

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, +4

Science

GeneticsTranscriptomics TechnologyMolecular GeneticsTranscriptional LandscapeGenomics +17

Genome-wide Map of Nucleosome Acetylation and Methylation in Yeast

Dmitry Pokholok, Christopher Harbison, Stuart S. Levine, +11

Cell

ChromatinChromatin StructureChromatin RemodelingNatural SciencesGenetics +8

Molecular Interplay of the Noncoding RNA ANRIL and Methylated Histone H3 Lysine 27 by Polycomb CBX7 in Transcriptional Silencing of INK4a

Kyoko L. Yap, SiDe Li, Ana M. Muñoz-Cabello, +6

Molecular Cell

Histone ModificationsChromatinTranscriptional RegulationNoncoding Rna AnrilNatural Sciences +9

Bidirectional promoters generate pervasive transcription in yeast

Zhenyu Xu, Wu Wei, Julien Gagneur, +7

Nature

Transcriptional RegulationGeneticsBidirectional PromotersGene RegulationYeast +4

The <i>Air</i> Noncoding RNA Epigenetically Silences Transcription by Targeting G9a to Chromatin

Takashi Nagano, Jennifer A. Mitchell, Lionel A. Sanz, +4

Science

Histone ModificationsTruncated AirEpigenetic ChangeGeneticsAir Ncrna +17

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

Szymon Świeżewski, Fuquan Liu, Andreas Magusin, +1

Nature

Plant Molecular BiologyRna ProcessingTranscriptional RegulationNatural SciencesCold-induced Silencing +8

Cryptic Pol II Transcripts Are Degraded by a Nuclear Quality Control Pathway Involving a New Poly(A) Polymerase

Françoise Wyers, Mathieu Rougemaille, Gwenaël Badis, +9

Cell

Systems BiologyNatural SciencesNew PolyMolecular BiologyDna Replication +5

Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA

Wenqiang Yu, David Gius, Patrick Onyango, +4

Nature

Epigenetic SilencingTumor BiologyAntisense RnaAntisense TherapyTumor Suppressor +5