Concepedia
Journal of Biological Chemistry · 2008 · 69 citations · 51 references
Open access
51
Particle mesh Ewald: An <i>N</i>⋅log(<i>N</i>) method for Ewald sums in large systems
Tom Darden, Darrin M. York, Lee G. Pedersen · The Journal of Chemical Physics · 1993 · 29.8K citations · Full text
Numerical Analysis, Engineering, Electrostatic Energies +18
Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes
Jean-Paul Ryckaert, Giovanni Ciccotti, Herman J. C. Berendsen · Journal of Computational Physics · 1977 · 21.1K citations
Numerical Analysis, Cartesian Equations, Engineering +11
<scp>CHARMM</scp>: A program for macromolecular energy, minimization, and dynamics calculations
Bernard R. Brooks, Robert E. Bruccoleri, Barry D. Olafson et al. · Journal of Computational Chemistry · 1983 · 14.9K citations
Engineering, Molecular Biology, Empirical Energy Function +21
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins
Alexander D. MacKerell, Donald Bashford, M. Bellott et al. · The Journal of Physical Chemistry B · 1998 · 14.4K citations
Engineering, Molecular Biology, Computational Chemistry +17
The protein data bank: A computer-based archival file for macromolecular structures
F. C. Bernstein, Thomas F. Koetzle, G. J. B. Williams et al. · Journal of Molecular Biology · 1977 · 8.6K citations
Structural Bioinformatics, Biomolecular Structure Prediction, Protein Folding +13