Inorganic Chemistry · 2006 · 65 citations · 54 references
Natural SciencesBiochemistryChemistryEnzymologyInorganic ChemistryStructural BiologyBioinorganic ChemistryCoordination ChemistryEnzyme FunctionLigand BindingMetal-ligand BondingTransition Metal ComplexesActive Site CharacterizationElectronic State InteractionsIron ComplexationLigand ChemistryNon-heme Iron EnzymesSpectrochemical SeriesSteric ConstraintsSteric-electronic Interactions
A unique distorted trigonal-bipyramidal geometry observed for the non-heme iron center in protocatechuate 3,4-dioxygenase (3,4-PCD) was carefully examined utilizing a sterically hindered iron salen complex, which well reproduces the endogenous His2Tyr2 donor set with water as an external ligand. X-ray crystal structures of a series of iron model complexes containing bis(3,5-dimesitylsalicylidene)-1,2-dimesitylethylenediamine indicate that a distorted trigonal-bipyramidal geometry is achieved upon binding of water as an external ligand. The extent of a structural change of the iron center from a preferred square-pyramidal to a distorted trigonal-bipyramidal geometry varies with the external ligand that is bound in the order Cl << EtO < H2O, which is consistent with the spectrochemical series. The distortion in the model system is not due to steric repulsions but electronic interactions between the external ligand and the iron center, as evidenced from the X-ray crystal structures of another series of iron model complexes with a less-hindered bis(3-xylylsalicylidene)-1,2-dimesitylethylenediamine ligand, as well as by density functional theory calculations. Further spectroscopic investigations indicate that a unique distorted trigonal-bipyramidal geometry is indeed maintained even in solution. The present model study provides a new viewpoint that a unique distorted trigonal-bipyramidal iron site might not be preorganized by a 3,4-PCD protein but could be electronically induced upon the binding of an external hydroxide ligand to the iron(III) center. The structural change induced by the external water ligand is also discussed in relation to the reaction mechanism of 3,4-PCD.
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Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
Andreas Karlsson, Juanito V. Parales, Rebecca E. Parales et al. · Science · 2003 · 557 citations
Structure of an aromatic-ring-hydroxylating dioxygenase – naphthalene 1,2-dioxygenase
Björn Kauppi, Kyoung Lee, Enrique Carredano et al. · Structure · 1998 · 507 citations · Full text