PLoS ONE · 2014 · 174 citations · 35 references
Comparative GenomicsGeneticsEntomologyDna AnalysisDna Barcode PerformanceGenomicsDna BarcodingGenetic DiversityPhylogeneticsMolecular EcologyBiogeographyLarge Geographic DistancesBiostatisticsPhylogeny ComparisonBiodiversityBarcode LibrariesStatistical GeneticsGenetic VariationPopulation GeneticsReference LibraryDna BarcodesBiologyNatural SciencesEvolutionary BiologyPhylogenetic MethodEuropean LepidopteraPopulation GenomicsMedicine
This study examines the performance of DNA barcodes (mt cytochrome c oxidase 1 gene) in the identification of 1004 species of Lepidoptera shared by two localities (Finland, Austria) that are 1600 km apart. Maximum intraspecific distances for the pooled data were less than 2% for 880 species (87.6%), while deeper divergence was detected in 124 species. Despite such variation, the overall DNA barcode library possessed diagnostic COI sequences for 98.8% of the taxa. Because a reference library based on Finnish specimens was highly effective in identifying specimens from Austria, we conclude that barcode libraries based on regional sampling can often be effective for a much larger area. Moreover, dispersal ability (poor, good) and distribution patterns (disjunct, fragmented, continuous, migratory) had little impact on levels of intraspecific geographic divergence. Furthermore, the present study revealed that, despite the intensity of past taxonomic work on European Lepidoptera, nearly 20% of the species shared by Austria and Finland require further work to clarify their status. Particularly discordant BIN (Barcode Index Number) cases should be checked to ascertain possible explanatory factors such as incorrect taxonomy, hybridization, introgression, and Wolbachia infections.
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R: A Language and Environment for Statistical Computing
R Core Team · 2000 · 352.8K citations · Full text
Koichiro Tamura, Daniel G. Peterson, Nora Peterson et al. · Molecular Biology and Evolution · 2011 · 40.1K citations · Full text
Maximum Parsimony Methods, Comparative Genomics, Genetics +20
Biological identifications through DNA barcodes
Paul D. N. Hebert, Alina Cywinska, Shelley L. Ball et al. · Proceedings of the Royal Society B Biological Sciences · 2003 · 13K citations · Full text