The Role of Context-Dependent Mutations in Generating Compositional and Codon Usage Bias in Grass Chloroplast DNA

<i>The Theory of Stochastic Processes</i>

D. R. Cox, H. D. Miller, George H. Weiss et al. · Physics Today · 1966 · 3.4K citations

Engineering, Discrete Probability, Natural Sciences +13

Estimating Synonymous and Nonsynonymous Substitution Rates Under Realistic Evolutionary Models

Ziheng Yang, Rasmus Nielsen · Molecular Biology and Evolution · 2000 · 1.8K citations

Genetics, Genomics, Sequence Alignment +26

The selection-mutation-drift theory of synonymous codon usage.

Michael Bulmer · Genetics · 1991 · 1K citations · Full text

Biology, Synonymous Codon Usage, Molecular Ecology +15

A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome.

Spencer V. Muse, Brandon S. Gaut · Molecular Biology and Evolution · 1994 · 959 citations · Full text

New Tests, Comparative Genomics, Genetics +19

Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

Hiroshi Akashi · Genetics · 1994 · 759 citations · Full text