Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

Paul Shannon, Andrew Markiel, Owen Ozier, +6

Genome Research

Gene Ontology: tool for the unification of biology

Michael Ashburner, Catherine A. Ball, Judith A. Blake, +17

Nature Genetics

Functional GenomicsEngineeringBioinformatics DatabaseBiological DatabaseMedicine +9

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

Da Wei Huang, Brad T. Sherman, Richard A. Lempicki

Nature Protocols

BiologyFunctional GenomicsLarge Gene ListsEngineeringBiological Database +13

STRING 8--a global view on proteins and their functional interactions in 630 organisms

Lars Juhl Jensen, Michael Kuhn, Mitchell Stark, +9

Nucleic Acids Research

Oligomeric Complexes Link Rab5 Effectors with NSF and Drive Membrane Fusion via Interactions between EEA1 and Syntaxin 13

Heidi M. McBride, Vladimir Rybin, Carol Murphy, +3

Cell

Protein FunctionSignal TransductionMolecular BiologyBiomolecular InteractionProtein Transport +6

Systems survey of endocytosis by multiparametric image analysis

Claudio Collinet, Martin Stöter, Charles R. Bradshaw, +11

Nature

Machine VisionImage AnalysisMedical ImagingEngineeringBioimage Analysis +8

Rab6 Coordinates a Novel Golgi to ER Retrograde Transport Pathway in Live Cells

Jamie White, Ludger Johannes, Frédéric Mallard, +8

The Journal of Cell Biology

Live CellsRetrograde CargoSignal TransductionNovel GolgiImmunology +11

Functional genomics reveals genes involved in protein secretion and Golgi organization

Frédéric Bard, Laetitia Casano, Arrate Mallabiabarrena, +9

Nature

Golgi ApparatusProtein SecretionSignal TransductionProtein FunctionMedicine +12

Derlin-2 and Derlin-3 are regulated by the mammalian unfolded protein response and are required for ER-associated degradation

Yukako Oda, Tetsuya Okada, Hiderou Yoshida, +3

The Journal of Cell Biology

A probability-based approach for the analysis of large-scale RNAi screens

Renate König, Chih-Yuan Chiang, Buu P. Tu, +8

Nature Methods

Functional GenomicsEngineeringGeneticsLarge-scale Rnai ScreensComputational Biology +9