Concepedia

RNA-seq analysis of mucosal immune responses reveals signatures of intestinal barrier disruption and pathogen entry following Edwardsiella ictaluri infection in channel catfish, Ictalurus punctatus

Chao Li, Yu Zhang, Ruijia Wang, Jianguo Lü, Samiran Nandi, Sriprakash Mohanty, Jeffery S. Terhune, Zhanjiang Liu, Eric Peatman

Fish & Shellfish Immunology · 2012 · 227 citations · 63 references

References

63

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Weizhong Li, Adam Godzik · Bioinformatics · 2006 · 12.1K citations · Full text

Life Sciences, Bioinformatics, Computational Biology +11

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino, Ewan Birney · Genome Research · 2008 · 9.7K citations · Full text

Life Sciences, Bioinformatics, Biology +14

Relative expression software tool (REST(C)) for group-wise comparison and statistical analysis of relative expression results in real-time PCR

Michael W. Pfaffl · Nucleic Acids Research · 2002 · 7.4K citations · Full text

Life Sciences, Biostatistics, Molecular Biology +15

CAP3: A DNA Sequence Assembly Program

Xiaoqiu Huang, Anup Madan · Genome Research · 1999 · 5.3K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +16

High-throughput functional annotation and data mining with the Blast2GO suite

Stefan Götz, Juan M. García‐Gómez, Javier Terol et al. · Nucleic Acids Research · 2008 · 4.7K citations · Full text

Life Sciences, Bioinformatics, Computational Biology +12