Zeitschrift für Physikalische Chemie · 2006 · 30 citations · 22 references
Natural SciencesBiophysicsMaterials ScienceBiomaterialsSurface ChemistrySurface ScienceAdsorption At InterfacesBiomolecular InterfacesIntermolecular ForcesMolecular DynamicsProtein AdsorptionSurface AdsorptionAdsorbate InteractionsAdsorption PropertiesClassical Molecular DynamicsProtein Adsorption DynamicsProtein Adsorption To BiomaterialsProtein-surface InteractionsRutile OxidesSurface Adsorption Simulation
The adsorption of flexible collagen I triple helices with lengths of 8 nm in aqueous solution on a partially hydroxylated rutile layer (pH = 7.4) is modelled by classical molecular dynamics simulation with trajectories of up to 5 ns lengths. The carboxyl groups of glutamic and aspartic acids form hydrogen bonds with surface protons, which result in stable contact points at 300 K, if the bond length is smaller than 2 Å. Lysine side chains bind to surface hydroxyl groups. In spite of rotational motion around the C–N figure axis and opening and closing of hydrogen bonds, the amino groups are immobilized at the surface at N–O distances below 4 Å. In all runs the proteins have few contact points to the surface even though it is perfectly planar in our simulation. We suggest that the experimentally observed increase of adsorption energy and area per molecule over time may be associated to an increase of the number of contact points, which induces spreading of the adsorbate.
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VMD: Visual molecular dynamics
William Humphrey, Andrew Dalke, Klaus Schulten · Journal of Molecular Graphics · 1996 · 66.6K citations
Crystal and Molecular Structure of a Collagen-Like Peptide at 1.9 Å Resolution
Jordi Bella, Mark Eaton, Barbara Brodsky et al. · Science · 1994 · 1.1K citations