Hieranoid: Hierarchical Orthology Inference

Search and clustering orders of magnitude faster than BLAST

R. C. Edgar · Bioinformatics · 2010 · 21.7K citations · Full text

Life Sciences, Bioinformatics, Biology +14

Database resources of the National Center for Biotechnology Information: update

David Wheeler · Nucleic Acids Research · 2003 · 11K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

HMMER web server: interactive sequence similarity searching

ROBERT FINN, Jody Clements, Sean R. Eddy · Nucleic Acids Research · 2011 · 6.4K citations · Full text

Life Sciences, Bioinformatics, Computer Science +16

The COG database: an updated version includes eukaryotes

Roman L. Tatusov, Natalie D. Fedorova, John D. Jackson et al. · BMC Bioinformatics · 2003 · 4.5K citations · Full text

Life Sciences, Biology, Evolutionary Biology +14

Protein homology detection by HMM–HMM comparison

Johannes Söding · Bioinformatics · 2004 · 2.5K citations · Full text

Life Sciences, Bioinformatics, Protein Structure Prediction +16