Concepedia

Porcine reproductive and respiratory syndrome virus diversity of Eastern Canada swine herds in a large sequence dataset reveals two hypervariable regions under positive selection

Benjamin Delisle, Carl A. Gagnon, Marie-Ève Lambert, Sylvie D’Allaire

Infection Genetics and Evolution · 2012 · 79 citations · 36 references

References

36

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

Stéphane Guindon, Jean-François Dufayard, Vincent Lefort et al. · Systematic Biology · 2010 · 19K citations · Full text

Life Sciences, Bioinformatics, Biology +16

PAML 4: Phylogenetic Analysis by Maximum Likelihood

Molecular Biology and Evolution · 2007 · 14.8K citations · Full text

Life Sciences, Bioinformatics, Evolutionary Biology +17

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.

M Nei, T Gojobori · Molecular Biology and Evolution · 1986 · 5K citations · Full text

Life Sciences, Genetics, Molecular Genetics +13

Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection

Sergei L. Kosakovsky Pond, Simon D. W. Frost · Molecular Biology and Evolution · 2005 · 2.5K citations

Life Sciences, Bioinformatics, Evolutionary Biology +13

RDP3: a flexible and fast computer program for analyzing recombination

Darren P. Martin, Philippe Lemey, Martin Lott et al. · Bioinformatics · 2010 · 1.6K citations · Full text

Life Sciences, Bioinformatics, Evolutionary Biology +16