Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, +1

Nucleic Acids Research

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems

André E. Minoche, Juliane C. Dohm, Heinz Himmelbauer

Genome biology

Sequence-specific error profile of Illumina sequencers

Kensuke Nakamura, Taku Oshima, Takuya Morimoto, +10

Nucleic Acids Research

Long-read SequencingSequence DesignFunctional GenomicsConsecutive MiscallsNext-generation Sequencing +13

Widespread RNA and DNA Sequence Differences in the Human Transcriptome

Mingyao Li, Isabel X. Wang, Yun Li, +4

Science

EngineeringGeneticsDiscordant Rna SequencesTranscriptomics TechnologyDna Sequences +15

Improved base calling for the Illumina Genome Analyzer using machine learning strategies

Martin Kircher, Udo Stenzel, Janet Kelso

Genome biology

SHREC: a short-read error correction method

Jan Schröder, Heiko Schröder, Simon J. Puglisi, +2

Bioinformatics

HiTEC: accurate error correction in high-throughput sequencing data

Lucian Ilie, Farideh Fazayeli, Silvana Ilie

Bioinformatics

Discovery of barley miRNAs through deep sequencing of short reads

Andreas Schreiber, Bu‐Jun Shi, Chun-Yuan Huang, +2

BMC Genomics

Swift: primary data analysis for the Illumina Solexa sequencing platform

Nava Whiteford, Tom Skelly, Christina Curtis, +5

Bioinformatics

Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing

Wei Qü, Shinichi Hashimoto, Shinichi Morishita

Genome Research