Structural Equation Modeling A Multidisciplinary Journal · 2015 · 335 citations · 16 references
ComputingVisualizationData VisualizationMultivariate VisualizationScientific VisualizationDirected Acyclic GraphsStructural Equation ModelingGraphical Representation Of ModelsPlacement Algorithms
Structural equation modeling (SEM) has a long history of representing models graphically as path diagrams. This article presents the freely available semPlot package for R, which fills the gap between advanced, but time-consuming, graphical software and the limited graphics produced automatically by SEM software. In addition, semPlot offers more functionality than drawing path diagrams: It can act as a common ground for importing SEM results into R. Any result usable as input to semPlot can also be represented in any of the 3 popular SEM frameworks, as well as translated to input syntax for the R packages sem (Fox, Nie, & Byrnes, 2013) and lavaan (Rosseel, 2012). Special considerations are made in the package for the automatic placement of variables, using 3 novel algorithms that extend the earlier work of Boker, McArdle, and Neale (2002). The article concludes with detailed instructions on these node-placement algorithms.
16
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
Paul Shannon, Andrew Markiel, Owen Ozier et al. · Genome Research · 2003 · 54.3K citations · Full text
The igraph software package for complex network research
Gábor Csárdi, Tamás Nepusz · Medical Entomology and Zoology · 2006 · 10.4K citations