Transcriptomics of differential vector competence: West Nile virus infection in two populations of Culex pipiens quinquefasciatus linked to ovary development

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 22.5K citations · Full text

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.1K citations

Developmental Biology, Functional Genomics, Rna Biology +10

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12K citations · Full text

An evolutionary conserved function of the JAK-STAT pathway in anti-dengue defense

Jayme A. Souza‐Neto, Shuzhen Sim, George Dimopoulos · Proceedings of the National Academy of Sciences · 2009 · 582 citations · Full text

Major Mosquito Vector, Anti-dengue Defense, Virus Infection +15

Statistical inferences for isoform expression in RNA-Seq

Hui Jiang, Wing Hung Wong · Bioinformatics · 2009 · 479 citations · Full text

Engineering, Genetics, Transcriptomics Technology +18