Concepedia

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

Richard J. O’Connell, Michael R. Thon, Stéphane Hacquard, Stefan G. Amyotte, Jochen Kleemann, María Fernanda Torres, Ulrike Damm, Ester Buiate, Lynn Epstein, Noam Alkan,

Nature Genetics · 2012 · 1K citations · 53 references

DOIFull text

Open access

Concepts

References

53

<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 42.7K citations · Full text

MrBayes 3: Bayesian phylogenetic inference under mixed models

Fredrik Ronquist, John P. Huelsenbeck · Bioinformatics · 2003 · 29.1K citations · Full text

, , +14

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 28.9K citations · Full text

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 22.5K citations · Full text

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

Kazutaka Katoh · Nucleic Acids Research · 2002 · 17K citations · Full text