Analysis of the canine brain transcriptome with an emphasis on the hypothalamus and cerebral cortex

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.5K citations

Life Sciences, Cell Biology, Molecular Biology +16

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell, Adam Roberts, Loyal A. Goff et al. · Nature Protocols · 2012 · 12.9K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +12

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12.1K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +16

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

Bioinformatics · 2005 · 12.1K citations · Full text

Life Sciences, Bioinformatics, Biology +12

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

Todd M. Lowe, Sean R. Eddy · Nucleic Acids Research · 1997 · 11.2K citations

Life Sciences, Bioinformatics, Molecular Biology +11