Five phylogenetic groups identified in the coat protein gene of grapevine leafroll-associated virus 3 obtained from Portuguese grapevine varieties

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Julie Thompson, Desmond G. Higgins, Toby J. Gibson · Nucleic Acids Research · 1994 · 64.9K citations · Full text

Life Sciences, Bioinformatics, Sequence Analysis +14

BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT

T. A. Hall · Nucleic Acids Symposium Series · 1999 · 38.7K citations

Life Sciences, Bioinformatics, Molecular Biology +6

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

Koichiro Tamura, Joel T. Dudley, M Nei et al. · Molecular Biology and Evolution · 2007 · 28.8K citations · Full text

Life Sciences, Bioinformatics, Evolutionary Biology +17

Datamonkey: rapid detection of selective pressure on individual sites of codon alignments

Sergei L. Kosakovsky Pond, Simon D. W. Frost · Computer applications in the biosciences · 2005 · 1.4K citations · Full text

Life Sciences, Bioinformatics, Evolutionary Biology +13

RDP2: recombination detection and analysis from sequence alignments

Darren P. Martin, Carolyn Williamson, David Posada · Bioinformatics · 2004 · 965 citations · Full text

Life Sciences, Bioinformatics, Genetics +12