PLoS ONE · 2010 · 81 citations · 36 references
Life SciencesBiologyMarine SciencesMarine BiodiversityMarine EcologyMolecular EvolutionPhylogenetic PatternsPhylogenomic AnalysisBarcoding MarkersDna BarcodingRadiation PatternsSponge BiodiversitySponge EvolutionSponge PhylogenySponge SystematicsSponge Taxonomy
BACKGROUND: DNA barcoding is a promising tool to facilitate a rapid and unambiguous identification of sponge species. Demosponges of the order Dictyoceratida are particularly challenging to identify, but are of ecological as well as biochemical importance. METHODOLOGY/PRINCIPAL FINDINGS: Here we apply DNA barcoding with the standard CO1-barcoding marker on selected Indo-Pacific specimens of two genera, Ircinia and Psammocinia of the family Irciniidae. We show that the CO1 marker identifies several species new to science, reveals separate radiation patterns of deep-sea Ircinia sponges and indicates dispersal patterns of Psammocinia species. However, some species cannot be unambiguously barcoded by solely this marker due to low evolutionary rates. CONCLUSIONS/SIGNIFICANCE: We support previous suggestions for a combination of the standard CO1 fragment with an additional fragment for sponge DNA barcoding.
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Basic local alignment search tool
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
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Paul D. N. Hebert, Alina Cywinska, Shelley L. Ball et al. · Proceedings of the Royal Society B Biological Sciences · 2003 · 13.3K citations · Full text